dotplot01-alex | executable for dotplot01.c program |
dotplot02-alex | executable for dotplot02.c program |
iconvert-alex | executable for iconvert.c program |
dna2amino-alex | executable for dna2amino.c program |
palindrome-alex | executable for palindrome.c program |
seq2ppm-alex | executable for seq2ppm.c program |
These tests are to get you started
dotplot01.c, dotplot02.c
plot-test01 | plot1.ppm: dotplot01.c output | plot1-3.ppm: dotplot02.c oupout |
plot-test02 | plot2.ppm: dotplot01.c output | plot2-3.ppm: dotplot02.c oupout |
plot-test03 | plot3.ppm: dotplot01.c output | plot3-3.ppm: dotplot02.c oupout |
icomplement.c, dna2ppm.c, palindrom.c
dna-tests.tar.gz | all tests |
dna-test01 |
dna-test02 |
dna-test03 |
dna-test04 |
dna-test05 |
dna-test06 |
dna-test07 |
dna-test08 |
dna-test09 |
dna-test10 |
seq2ppm.c
seq-test01 | seq1.ppm: output |
seq-test02 | seq2.ppm: output |
seq-test03 | seq2.ppm: output |
This data comes from various on-line genome sequence databases
dotplot01.c, dotplot02.c
plot-tests.tar.gz: | All tests (1 -- 15) |
Input File | dotplot01 output | dotplot02 output | Origin |
---|---|---|---|
plot-test04 | plot04.ppm | plot04-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
plot-test05 | plot05.ppm | plot05-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
plot-test06 | plot06.ppm | plot06-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
plot-test07 | plot07.ppm | plot07-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
plot-test08 | plot08.ppm | plot08-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
plot-test09 | plot09.ppm | plot09-3.ppm | ribosomal protein S3: human vs. chimpanzee |
plot-test10 | plot10.ppm | plot10-3.ppm | ribosomal protein S3: human vs. dog |
plot-test11 | plot11.ppm | plot11-3.ppm | ribosomal protein S3: human vs. mouse |
plot-test12 | plot12.ppm | plot12-3.ppm | ribosomal protein S3: human vs. moscito |
plot-test13 | plot13.ppm | plot13-3.ppm | fragment of HD protein (Huntington's disease) vs. itself |
plot-test14 | plot14.ppm | plot14-3.ppm | forkhead box P2 (regulates transcription in brain development) fragment: human vs. chmpanzee |
plot-test15 | plot15.ppm | plot15-3.ppm | fragments (nucleotides) of two influenza viruses |
icomplement.c, dna2ppm.c, palindrom.c
Fragments of influenza A (H1N1) virus.
dna-fragments.tar.gz | all tests |
dna-fragment01 |
dna-fragment02 |
dna-fragment03 |
dna-fragment04 |
dna-fragment05 |
dna-fragment06 |
dna-fragment07 |
dna-fragment08 |
dna-fragment09 |
dna-fragment10 |
seq2ppm.c
Tests 4-9 - fragments of 10 strains of Influenza A (2008 and 2009 versions).
Test 10: synthetic.
seq-tests.tar.gz | all tests |
seq-test04 | sq4.ppm |
seq-test05 | sq5.ppm |
seq-test06 | sq6.ppm |
seq-test07 | sq7.ppm |
seq-test08 | sq8.ppm |
seq-test09 | sq9.ppm |
seq-test10 | sq10.ppm |