| dotplot01-alex | executable for dotplot01.c program |
| dotplot02-alex | executable for dotplot02.c program |
| iconvert-alex | executable for iconvert.c program |
| dna2amino-alex | executable for dna2amino.c program |
| palindrome-alex | executable for palindrome.c program |
| seq2ppm-alex | executable for seq2ppm.c program |
These tests are to get you started
dotplot01.c, dotplot02.c
| plot-test01 | plot1.ppm: dotplot01.c output | plot1-3.ppm: dotplot02.c oupout |
| plot-test02 | plot2.ppm: dotplot01.c output | plot2-3.ppm: dotplot02.c oupout |
| plot-test03 | plot3.ppm: dotplot01.c output | plot3-3.ppm: dotplot02.c oupout |
icomplement.c, dna2ppm.c, palindrom.c
| dna-tests.tar.gz | all tests |
| dna-test01 |
| dna-test02 |
| dna-test03 |
| dna-test04 |
| dna-test05 |
| dna-test06 |
| dna-test07 |
| dna-test08 |
| dna-test09 |
| dna-test10 |
seq2ppm.c
| seq-test01 | seq1.ppm: output |
| seq-test02 | seq2.ppm: output |
| seq-test03 | seq2.ppm: output |
This data comes from various on-line genome sequence databases
dotplot01.c, dotplot02.c
| plot-tests.tar.gz: | All tests (1 -- 15) |
| Input File | dotplot01 output | dotplot02 output | Origin |
|---|---|---|---|
| plot-test04 | plot04.ppm | plot04-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
| plot-test05 | plot05.ppm | plot05-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
| plot-test06 | plot06.ppm | plot06-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
| plot-test07 | plot07.ppm | plot07-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
| plot-test08 | plot08.ppm | plot08-3.ppm | (matching) fragments of two influenza (H1N1) viruses (2009 strain) |
| plot-test09 | plot09.ppm | plot09-3.ppm | ribosomal protein S3: human vs. chimpanzee |
| plot-test10 | plot10.ppm | plot10-3.ppm | ribosomal protein S3: human vs. dog |
| plot-test11 | plot11.ppm | plot11-3.ppm | ribosomal protein S3: human vs. mouse |
| plot-test12 | plot12.ppm | plot12-3.ppm | ribosomal protein S3: human vs. moscito |
| plot-test13 | plot13.ppm | plot13-3.ppm | fragment of HD protein (Huntington's disease) vs. itself |
| plot-test14 | plot14.ppm | plot14-3.ppm | forkhead box P2 (regulates transcription in brain development) fragment: human vs. chmpanzee |
| plot-test15 | plot15.ppm | plot15-3.ppm | fragments (nucleotides) of two influenza viruses |
icomplement.c, dna2ppm.c, palindrom.c
Fragments of influenza A (H1N1) virus.
| dna-fragments.tar.gz | all tests |
| dna-fragment01 |
| dna-fragment02 |
| dna-fragment03 |
| dna-fragment04 |
| dna-fragment05 |
| dna-fragment06 |
| dna-fragment07 |
| dna-fragment08 |
| dna-fragment09 |
| dna-fragment10 |
seq2ppm.c
Tests 4-9 - fragments of 10 strains of Influenza A (2008 and 2009 versions).
Test 10: synthetic.
| seq-tests.tar.gz | all tests |
| seq-test04 | sq4.ppm |
| seq-test05 | sq5.ppm |
| seq-test06 | sq6.ppm |
| seq-test07 | sq7.ppm |
| seq-test08 | sq8.ppm |
| seq-test09 | sq9.ppm |
| seq-test10 | sq10.ppm |