3D Protein Simulation Screenshots

CPE 471 Final Project Winter 2010

    Simulation of Cysteine amino acid. Information about the amino acid as well as the names and color code of elements is shown.


    Simulation of Leucine amino acid. This amino acid has been rotated and light position has been changed by using the controls on the left panel.


    Rendering of polypeptide COL1A1. The length of the polypeptide has been set to only draw 10 amino acids. The amino acid sequence for this polypeptide is shown on the bottom panel. The carboxyl and Amine groups of the starting and ending amino acids are left intact while the ones in the chain are removed and replaced by a single bond.


    Rendering of COL1A1 polypepdite. The length of the polypeptide has been set to only draw 10 amino acids as linear electron shells.


    Rendering of COL1A1 polypepdite. The length of the polypeptide has been set to only draw 10 amino acids as bond planar.


    Rendering of a protein composed of three polypeptides. (PTPCOL in this case has been created to demonstrate the variety of amino acids in the chain. Please see below for the image of the input file used to render it)


    Rendering of a protein composed of three polypeptides. Rendering as electron shells. (PTPCOL in this case has been created to demonstrate the variety of amino acids in the chain. Please see below for the image of the input file used to render it)


    Rendering of a protein composed of three polypeptides of length 38 amino acids. (PTPCOL in this case has been created to demonstrate the variety of amino acids in the chain. Please see below for the image of the input file used to render it)


    Rendering of a protein composed of three polypeptides. Rendered as electron shell. (PTPCOL in this case has been created to demonstrate the variety of amino acids in the chain. Please see below for the image of the input file used to render it)


    Example of the input file (.p) required to render a protein. Each of the letters is an amino acid and the three sections divided by (+Header) is a polypeptide.